PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104205001
Common NameGSBRNA2T00104205001, LOC106372343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 286aa    MW: 31064.1 Da    PI: 6.5762
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104205001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.41.3e-29181236158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RR++Rak+e e+k+   +rkpylheSRhkhA+rR+R+sgGrF
  GSBRNA2T00104205001 181 QEPVYVNAKQYEGILRRRKARAKAELERKV--INRKPYLHESRHKHAMRRARASGGRF 236
                          69***************************9..89***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-31179239IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.587180239IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-26182236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23183205IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860185205IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23213236IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQSKSGRGNE EEANHHHADQ QQQQQPMMYP EPWWKTNAFG VIPQERPSVL PSNSSSLDCP  60
NGSESNDVHS ASEDGGGAGN GENDAAWKDS QAVTSSPSVD QHGMEGSDPT HVAASMHGMH  120
NQQPVQPPEL VGHYMACVPP NPYQDPYYAG MMGAYGHQPL GFRPYLGMPR ERTALPLDIT  180
QEPVYVNAKQ YEGILRRRKA RAKAELERKV INRKPYLHES RHKHAMRRAR ASGGRFAKKT  240
EAEAAAEDAA AAAGREREKG SATNSSGSEP VETDSNETLN SSGAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-15180236158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220229RHKHAMRRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.212610.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104205001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876771e-164KC787677.1 Brassica napus transcription factor subunit NF-YA1A (NF-YA1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667993.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_013667994.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV51e-160NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A078E7K90.0A0A078E7K9_BRANA; BnaC09g44190D protein
STRINGBra008878.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-122nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]